Identifying tiny planktonic critters in the Arctic Ocean using a submersible camera system and artificial intelligence

Members of Québec-Océan recently published a paper based on a submersible camera system called LOKI. Deployed in the high Arctic, LOKI took images of zooplankton.

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Deploying LOKI from the CCGS Amundsen ( Photo credit:Jessy Barette)

Using these high definition images, an automatic identification model based on machine learning was developed that can reliably turn these images into taxonomic information. The camera system’s high vertical resolution (<1m) in combination with a very high resolution taxonomic model, identifying developmental stages of copepod species, enables scientists to study the link between zooplankton species and their abiotic as well as biotic environment with much detail. Especially the coupling between zooplankton and their phytoplankton prey is of high relevance in the face of climate change in the Arctic.

The model was recently used together with in-situ lipid analysis from images, yielding some very interesting results, so stay tuned!

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Sample images of LOKI (taken from Schmid et al., 2016)

To read the paper :

Schmid, MS, C Aubry, J Grigor, L Fortier (2016). The LOKI underwater imaging system and an automatic identification model for the detection of zooplankton taxa in the Arctic Ocean. Methods in Oceanography 15–16: 129–160.

http://www.sciencedirect.com/science/article/pii/S2211122015300050

Follow the project at schmidscience.com.

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Image of Peterman Glacier photographed from the CCGS Amundsen. LOKI Images from here were also used to develop the automatic identification model presented in the paper (Photo credit: Cyril Aubry).
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